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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2603057_2643937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2603057 - 2643937
Intron Length:
40881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATATATTTACAC
Flanking Amino Acid:
RIPGRTFSLKMTVMSHSKDL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
89.4
0.89
0.6
85.7
21.4
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
48
-0.1
1.8
59.93
38.8

Associated Gene:

Gene:
ZBTB38
Ensembl Gene ID:
ENSAPLG00000023064
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034014
2599484 - 2644011
44528