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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26047952_26054422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26047952 - 26054422
Intron Length:
6471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
RMRQEELLRQEAALCRQLPM
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
WWTR1
Ensembl Gene ID:
ENSAPLG00000009404
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035730
25994717 - 26055588
60872
ENSAPLT00000009789
26020521 - 26055588
35068
ENSAPLT00000048197
26030397 - 26055588
25192