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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26053985_26054490_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26053985 - 26054490
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTGGATAT
5'SS Class:
major
3'SS Sequence:
AAACAGCTGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
AAAACATGACCC
Flanking Amino Acid:
NGMELGQGNVSTAAMTQDMR
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
60.7
40.8
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
42.2
-0.4
1.7
39.9
43.6
Minor 5ss
24.2
-3
4
38.3
46.8
Minor BPS
42.9
-0.5
1.9
50.54
38.8

Associated Gene:

Gene:
WWTR1
Ensembl Gene ID:
ENSAPLG00000009404
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017293
26053836 - 26055157
1322