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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26054557_26054635_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26054557 - 26054635
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCTCTAAAGC
Flanking Amino Acid:
TNNGSDPFLNSGPYHSREQS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.6
1.12
0.8
80.1
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.5
0.8
0.7
81
29.9
Minor 5ss
30.2
-2.3
3.8
41.6
45
Minor BPS
49.4
-0
2
62.68
43.2

Associated Gene:

Gene:
WWTR1
Ensembl Gene ID:
ENSAPLG00000009404
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017293
26053836 - 26055157
1322
ENSAPLT00000009789
26020521 - 26055588
35068
ENSAPLT00000048197
26030397 - 26055588
25192
ENSAPLT00000035730
25994717 - 26055588
60872