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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26065912_26066219_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26065912 - 26066219
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTTTGATCT
Flanking Amino Acid:
GDCKCCGCCGGDGTV*
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.7
0.65
0.9
70.4
40.9
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
57.7
0.32
1.7
77.5
39

Associated Gene:

Gene:
TM4SF4
Ensembl Gene ID:
ENSAPLG00000009122
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009519
26065894 - 26070558
4665