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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26104843_26106701_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26104843 - 26106701
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCATACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
TTCCCCATACCC
Flanking Amino Acid:
LHGILGGGLLVLIPAAVFIG
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
66.3
0.37
0.9
57.8
36.5
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
52.9
0.07
1.9
69.03
42.3

Associated Gene:

Gene:
TM4SF1
Ensembl Gene ID:
ENSAPLG00000008792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009163
26104666 - 26108964
4299