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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26106792_26106880_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26106792 - 26106880
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
GTTTGCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTGTGCTGAAAA
Flanking Amino Acid:
GHENCGKSCAMISSVLAAFV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75.3
0.57
1
69.4
41.7
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
48.6
-0.1
2
61.29
44.6

Associated Gene:

Gene:
TM4SF1
Ensembl Gene ID:
ENSAPLG00000008792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009163
26104666 - 26108964
4299