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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26107030_26107466_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26107030 - 26107466
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGATGTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTATACT
Flanking Amino Acid:
WIYPFTESSGGYLFEYNKWS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.9
0.47
1.1
64.6
45.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
51.9
0.14
2.2
80.79
41

Associated Gene:

Gene:
TM4SF1
Ensembl Gene ID:
ENSAPLG00000008792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009163
26104666 - 26108964
4299