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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26113418_26115288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26113418 - 26115288
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTACTCACTT
Flanking Amino Acid:
FEGICFSGVMILLLAVILIA
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77.1
0.61
0.9
69.2
37
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
55.8
0.26
2
81.26
40.6

Associated Gene:

Gene:
TM4SF18
Ensembl Gene ID:
ENSAPLG00000008739
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021216
26113241 - 26118525
5285
ENSAPLT00000009088
26113241 - 26119600
6360
ENSAPLT00000023109
26113241 - 26118890
5650