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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26116179_26118161_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26116179 - 26118161
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTCTCTAATA
Flanking Amino Acid:
WDYIFKNTVGGYLTDYSAWS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.3
0.55
0.9
70.5
35
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
66.5
0.51
1.6
76.77
34.1

Associated Gene:

Gene:
TM4SF18
Ensembl Gene ID:
ENSAPLG00000008739
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023109
26113241 - 26118890
5650
ENSAPLT00000021216
26113241 - 26118525
5285
ENSAPLT00000009088
26113241 - 26119600
6360