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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26118343_26119585_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26118343 - 26119585
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTCCACTTCATT
Flanking Amino Acid:
LCGTYSVFVQAGIL*
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
52.5
0.16
2
74.17
42.9

Associated Gene:

Gene:
TM4SF18
Ensembl Gene ID:
ENSAPLG00000008739
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009088
26113241 - 26119600
6360