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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26125767_26127351_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26125767 - 26127351
Intron Length:
1585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTTTCTTTACA
Flanking Amino Acid:
IISGQLFAEEEQAEVFLKKG
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
72.5
0.7
1.5
81.25
33.4

Associated Gene:

Gene:
CP
Ensembl Gene ID:
ENSAPLG00000007796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032094
26125567 - 26144296
18730
ENSAPLT00000008158
26125567 - 26144274
18708