About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26132209_26133175_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26132209 - 26133175
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCACA
Flanking Amino Acid:
HFTGQELITDSESQIFFEQS
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.5
0.69
0.8
76.5
31.1
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
71.2
0.66
1.7
81.43
34

Associated Gene:

Gene:
CP
Ensembl Gene ID:
ENSAPLG00000007796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032094
26125567 - 26144296
18730
ENSAPLT00000008158
26125567 - 26144274
18708