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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26141780_26142584_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26141780 - 26142584
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAATCTTTTATT
Flanking Amino Acid:
EEFLESNKMHAINGKVFGNL
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.1
35.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.4
0.75
0.7
76.6
32
Minor 5ss
43.8
-0.7
3
58
42
Minor BPS
59.6
0.38
1.6
72.19
39

Associated Gene:

Gene:
CP
Ensembl Gene ID:
ENSAPLG00000007796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032094
26125567 - 26144296
18730
ENSAPLT00000008158
26125567 - 26144274
18708