Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26142725_26144203_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26142725 - 26144203

Intron Length:

1479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAA

U12 Branch Point Sequence:

TCCTCCTTACAG

Flanking Amino Acid:

HFHGHSFDYKTNSLCCQNYS

Intron Amino Acid Position:

1018

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

1.1

76.2

39.9

Major BPS

0.08

61.4

34.3

Major PPT

85.8

0.8

0.7

79.9

25.6

Minor 5ss

-1.1

3.3

58.7

45.8

Minor BPS

55.8

0.04

1.9

60.06

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032094

26125567 - 26144296

18730