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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26146633_26147859_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26146633 - 26147859
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
AATACCTTAAAC
Flanking Amino Acid:
DYPVLISSLKETLSVVSMEL
Intron Amino Acid Position:
967

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
66.8
0.38
1.1
64.5
41.4
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
69.2
0.58
1.4
72.85
37

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945