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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26149898_26150526_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26149898 - 26150526
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCTCTCACTC
Flanking Amino Acid:
TKPLKTTEDLINSCNRFGFI
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
73
0.52
0.7
67.9
25.7
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
47.9
-0.1
1.8
59.18
40.5

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945