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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26150716_26152046_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26150716 - 26152046
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCCTC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTATACTAACT
Flanking Amino Acid:
KLEEADVFFKILCNNSENTV
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.3
59.2
45.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
37.4
-1.4
3.3
50.8
45.8
Minor BPS
50.3
0.09
2
74.39
42

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945