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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26152233_26154082_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26152233 - 26154082
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
ACTATGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AGTTCTTTACCT
Flanking Amino Acid:
YEHEMGSHKETVLASGFTEQ
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72.2
0.5
0.9
65.8
40.2
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
69.6
0.69
1.6
82.97
38.2

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945