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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26155592_26155783_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26155592 - 26155783
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
GTATCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATCATGTATCT
Flanking Amino Acid:
VSTIQLYREMVDYSRTYENA
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
58.8
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.7
0.47
1
62.2
44.1
Minor 5ss
40.8
-1
2.7
48.3
42.4
Minor BPS
44.2
-0.3
2.3
67.52
43

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945