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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26155893_26156651_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26155893 - 26156651
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
GGCAACTTAACT
Flanking Amino Acid:
TERRKPTRRMLSRKANSIKS
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
77.9
36.4
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
83.1
0.75
0.7
76.9
31.9
Minor 5ss
42.3
-0.8
3.2
68.6
41.7
Minor BPS
60.7
0.41
1.6
71.79
44.2

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945