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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26161356_26162866_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26161356 - 26162866
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTGAATAATT
Flanking Amino Acid:
VSTLEEPGNGSVKDEDLSTH
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.5
0.37
1.1
71
38.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.4
-0
2.2
75.08
41.5

Associated Gene:

Gene:
HPS3
Ensembl Gene ID:
ENSAPLG00000007197
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007492
26146427 - 26164371
17945