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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26165975_26166880_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26165975 - 26166880
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTCCTTGAAG
Flanking Amino Acid:
FVDWCPTGFKVGINYQPPTV
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.5
0.57
1
76.1
32.9
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
70.8
0.51
1.5
72.96
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006973
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007233
26165570 - 26171006
5437