Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26169320_26171003_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26169320 - 26171003

Intron Length:

1684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGGAGC

5'SS Class:

major

3'SS Sequence:

TTTTAATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTATTTTTAATT

Flanking Amino Acid:

MRECISIHVGQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.1

56.6

42.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.2

0.86

0.8

85.7

33.4

Minor 5ss

25.9

-2.8

3.2

30.2

38.1

Minor BPS

72.1

0.77

1.2

79.64

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007233

26165570 - 26171006

5437