About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26175971_26179146_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26175971 - 26179146
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTCAACA
Flanking Amino Acid:
SVYSYLPAFKAFGANTKVVH
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.4
65.9
42.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
40.5
-1.1
2.8
44.7
43.5
Minor BPS
66
0.5
1.5
74.67
37.4

Associated Gene:

Gene:
GYG1
Ensembl Gene ID:
ENSAPLG00000006837
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007096
26174687 - 26188749
14063