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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26183750_26185572_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26183750 - 26185572
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTTTTGGCAACT
Flanking Amino Acid:
LITPQVSDSMREVLEKVFHE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
78
0.63
0.8
72.3
31.7
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
44.1
-0.3
2.7
72.31
44.6

Associated Gene:

Gene:
GYG1
Ensembl Gene ID:
ENSAPLG00000006837
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007096
26174687 - 26188749
14063