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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2661394_2661650_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2661394 - 2661650
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTACTGTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.8
0.67
1
77.1
41.8
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
49
0.01
2.2
76.03
41.4

Associated Gene:

Gene:
SLC16A14
Ensembl Gene ID:
ENSAPLG00000007923
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045536
2661265 - 2669805
8541
ENSAPLT00000030921
2658722 - 2668381
9660
ENSAPLT00000008229
2658722 - 2670045
11324