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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2668179_2669896_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2668179 - 2669896
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTCCTTATTT
Flanking Amino Acid:
VSALLGPPFAGWIYDITHKY
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
74.8
0.86
1.5
87.69
38.3

Associated Gene:

Gene:
SLC16A14
Ensembl Gene ID:
ENSAPLG00000007923
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008229
2658722 - 2670045
11324