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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2731886_2738730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2731886 - 2738730
Intron Length:
6845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTGTTTTGACT
Flanking Amino Acid:
AQPQDDAVGGRSHLGQAKHK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.4
0.6
1
72.4
37.8
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
65
0.55
1.4
77.64
39.7

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000045018
2731739 - 2780094
48356
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356