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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2731886_2739798_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2731886 - 2739798
Intron Length:
7913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTGAGTTTAACA
Flanking Amino Acid:
AQPQDDAVGGRGCSSSAVLV
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37.1
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
82.4
0.73
0.8
76.1
32.5
Minor 5ss
47.6
-0.2
2.8
64.3
47.2
Minor BPS
60.7
0.33
1.8
71.6
40.9

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019971
2731739 - 2780094
48356