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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2740599_2747688_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2740599 - 2747688
Intron Length:
7090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
AAATATTACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATCCCTTAAAT
Flanking Amino Acid:
GPSGLQAKLASLRKSTKKRS
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
57.6
0.17
1
51.3
41.7
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
73.5
0.82
1.3
83.26
36.5

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356
ENSAPLT00000019971
2731739 - 2780094
48356
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000045018
2731739 - 2780094
48356