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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2750011_2751395_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2750011 - 2751395
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GAAGCTTTGACA
Flanking Amino Acid:
SDDSEMGRLQALLEARGLPP
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
57.5
0.23
1.4
60.47
39.4

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019971
2731739 - 2780094
48356
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356