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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2750011_2752462_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2750011 - 2752462
Intron Length:
2452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
TCTGGATATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTTTCCTAATC
Flanking Amino Acid:
SDDSEMGRLQGSKAQQLLQG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
65.2
0.34
1
58.4
41.4
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
65.1
0.45
1.6
74.28
36.9

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045018
2731739 - 2780094
48356