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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2756390_2757048_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2756390 - 2757048
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AATAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACAATCTGAATA
Flanking Amino Acid:
PTLAVQLMKQNIAETLHFLL
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
27.7
Major BPS
80
0.75
1
78.6
31
Major PPT
73.8
0.54
1
65.6
44.3
Minor 5ss
39.1
-1.2
2.9
50.9
39.6
Minor BPS
50.5
0.01
1.4
55.92
37

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019971
2731739 - 2780094
48356
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000045018
2731739 - 2780094
48356
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356