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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2761222_2761348_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2761222 - 2761348
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ATCCTCTGAATT
Flanking Amino Acid:
PRDDEKVDNQAKSPTTTQSP
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.3
0.79
0.8
80.2
32
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
59.5
0.38
1.4
72.32
38.7

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356
ENSAPLT00000019971
2731739 - 2780094
48356
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000045018
2731739 - 2780094
48356