Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2771280_2771470_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2771280 - 2771470

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

CTTTTTTTACCT

Flanking Amino Acid:

GEEVTLANPKGSQEGTKYIH

Intron Amino Acid Position:

1705

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

30.6

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

77.4

0.62

0.8

73.3

30.3

Minor 5ss

34.7

-1.7

3.3

50.4

Minor BPS

67.2

0.62

1.6

82.56

39.6

Associated Gene:

Gene:

TRIP12

Ensembl Gene ID:

ENSAPLG00000007997

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019971

2731739 - 2780094

48356

ENSAPLT00000018445

2731739 - 2780094

48356

ENSAPLT00000045018

2731739 - 2780094

48356

ENSAPLT00000008429

2707206 - 2779740

72535

ENSAPLT00000041082

2731739 - 2780094

48356

ENSAPLT00000030147

2731739 - 2780094

48356