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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2772336_2773555_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2772336 - 2773555
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAG
5'SS Class:
major
3'SS Sequence:
GCAACTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTTTGCAACT
Flanking Amino Acid:
KKRLEQDKTQTKESLQYALE
Intron Amino Acid Position:
1812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.7
39.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
67.3
0.39
0.9
57.9
42.8
Minor 5ss
26
-2.8
3
29.9
43.3
Minor BPS
49.5
0.04
2.2
75.09
42.3

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000045018
2731739 - 2780094
48356
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356
ENSAPLT00000030147
2731739 - 2780094
48356
ENSAPLT00000019971
2731739 - 2780094
48356