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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2778637_2779543_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2778637 - 2779543
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAATC
Flanking Amino Acid:
VTGSPRLPVGGFRSLNPPLT
Intron Amino Acid Position:
1971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73
0.52
0.8
69.8
29.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
61.5
0.34
1.5
66.3
40

Associated Gene:

Gene:
TRIP12
Ensembl Gene ID:
ENSAPLG00000007997
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030147
2731739 - 2780094
48356
ENSAPLT00000019971
2731739 - 2780094
48356
ENSAPLT00000018445
2731739 - 2780094
48356
ENSAPLT00000045018
2731739 - 2780094
48356
ENSAPLT00000008429
2707206 - 2779740
72535
ENSAPLT00000041082
2731739 - 2780094
48356