Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_29603_30233_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29603 - 30233

Intron Length:

631

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTTGTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

TTTCACAGACTT

Flanking Amino Acid:

QYGRGRSGGQVRDEYRQDYD

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.8

38.3

Major BPS

77.7

0.69

30.2

Major PPT

0.41

1.1

74.7

33.9

Minor 5ss

40.5

-1.1

3.2

58.3

46.4

Minor BPS

43.8

-0.3

68.69

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015122

28240 - 33615

5376