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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3244376_3247523_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3244376 - 3247523
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
TCTGATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATTT
Flanking Amino Acid:
MAGRPPPRSLLETKHFS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.2
0.63
0.9
72.4
37.5
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
50.8
0.1
1.7
67.65
44

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000031726
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607