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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3244376_3266416_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3244376 - 3266416
Intron Length:
22041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTGTT
Flanking Amino Acid:
MAGRPPPSNFESPLMQE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.6
0.91
0.7
89
28.1
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
46.4
-0.1
3.6
83.32
38.7

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036182
3244353 - 3315959
71607