About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3247593_3266416_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3247593 - 3266416
Intron Length:
18824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTGTT
Flanking Amino Acid:
MLGLIKDAESNFESPLMQE
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.6
0.91
0.7
89
28.1
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
46.4
-0.1
3.6
83.32
38.7

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031726
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000039864
3247564 - 3317227
69664