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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3266520_3296972_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3266520 - 3296972
Intron Length:
30453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
LGSSVTACKKVCFVNLDANR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039864
3247564 - 3317227
69664