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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3297033_3300129_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3297033 - 3300129
Intron Length:
3097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TGTCTTTCAAAC
Flanking Amino Acid:
DDCSDEQVQQKLISVSPNLP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
74.8
0.56
0.9
67.1
37.9
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
49.8
-0
1.6
61.96
36.9

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031726
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000039864
3247564 - 3317227
69664
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000036182
3244353 - 3315959
71607