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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3300265_3302754_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3300265 - 3302754
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGCTCTTCATCT
Flanking Amino Acid:
MKFPSQYVQGCLQN
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.7
0.53
0.9
66.9
39.1
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
54.1
0.21
1.8
72.71
44.3

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040409
3300251 - 3317227
16977