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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3300265_3303220_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3300265 - 3303220
Intron Length:
2956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAAAT
Flanking Amino Acid:
NLQADYEVPQCPWLADVCLV
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.4
0.73
0.7
74.9
30.4
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
65.4
0.56
1.9
88.15
35.9

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000036182
3244353 - 3315959
71607
ENSAPLT00000031726
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000039864
3247564 - 3317227
69664