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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3302849_3303220_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3302849 - 3303220
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAAAT
Flanking Amino Acid:
MPTNNSLQRQCPWLADVCLV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.4
0.73
0.7
74.9
30.4
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
65.4
0.56
1.9
88.15
35.9

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040409
3300251 - 3317227
16977