About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3303477_3303762_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3303477 - 3303762
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAGCA
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
AATACCTTACTT
Flanking Amino Acid:
EENEADEYKTVGHEKISVSE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
63.8
34.2
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
30.2
-2.3
3.4
36.2
42.7
Minor BPS
62.9
0.48
1.6
76.51
40

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036182
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000040409
3300251 - 3317227
16977