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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3307499_3311742_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3307499 - 3311742
Intron Length:
4244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCATCCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CCTTCCTTATCA
Flanking Amino Acid:
KHTVSGSLLNSKNAQSRLDA
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68
0.41
1
59.7
41
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
69.7
0.62
1.6
74.85
43.1

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000036182
3244353 - 3315959
71607
ENSAPLT00000031726
3244353 - 3315959
71607
ENSAPLT00000027963
3244353 - 3315959
71607
ENSAPLT00000040409
3300251 - 3317227
16977
ENSAPLT00000021916
3244353 - 3317227
72875
ENSAPLT00000039864
3247564 - 3317227
69664