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Intron Name: Anas_platyrhynchos_platyrhynchos_9_3315544_3315627_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3315544 - 3315627

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

ATTATTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATACAT

U12 Branch Point Sequence:

TCCACGATAACT

Flanking Amino Acid:

FLKEQTENTEESTSGLSVGT

Intron Amino Acid Position:

1584

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

38.1

Major BPS

66.1

0.4

31.5

Major PPT

85.7

0.8

77.5

Minor 5ss

39.1

-1.2

2.8

40.9

45.4

Minor BPS

47.6

-0.1

2.3

69.33

47.1

Associated Gene:

Gene:

SPHKAP

Ensembl Gene ID:

ENSAPLG00000008536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031726

3244353 - 3315959

71607

ENSAPLT00000027963

3244353 - 3315959

71607

ENSAPLT00000021916

3244353 - 3317227

72875

ENSAPLT00000040409

3300251 - 3317227

16977

ENSAPLT00000008875

3244622 - 3317227

72606

ENSAPLT00000039864

3247564 - 3317227

69664